Publications by and about ProteomeBinders

2007 | 2008 | 2009 | 2010 | Editorials and Articles

2007

• Planning a European Resource of Affinity Reagents for Analysis of the Human Proteome.
  Taussig MJ, Stoevesandt O, Borrebaeck CA, Bradbury AR, Cahill D, Cambillau C, de Daruvar A, Dübel S, Eichler J, Frank R, Gibson TJ, Gloriam D, Gold L, Herberg FW, Hermjakob H, Hoheisel JD, Joos TO, Kallioniemi O, Koegl M, Konthur Z, Korn B, Kremmer E, Krobitsch S, Landegren U, van der Maarel S, McCafferty J, Muyldermans S, Nygren PA, Palcy S, Plückthun A, Polic B, Przybylski M, Saviranta P, Sawyer A, Sherman DJ, Skerra A, Templin M, Ueffing M, Uhlén M. Nature Methods 4:13-17 (2007) [pubmed] [pdf]
  
  
• Entering the implementation era: a report on the HUPO-PSI Fall workshop
  Orchard S et al Proteomics 7:337-9 (2007) [pubmed]
  
  
• Affinity Reagent Resources for Human Proteome Detection: Initiatives and Perspectives
  Stoevesandt O, Taussig MJ Proteomics, 7:2738-50 (2007) [pubmed] [pdf]
  
  
• Alternative non-antibody scaffolds for molecular recognition
  Skerra A Curr. Opinion Biotechnol. 18:295-304 (2007) [pubmed]
  
  
• Proximity ligation: a specific and versatile tool for the proteomic era
  Söderberg O et al Genet Eng (N Y). 28:85-93 (2007) [pubmed]
  
  
• Eukaryotic ribosome display with in situ DNA recovery.
  He M, Taussig MJ Nat Methods. 4:281-8 (2007) [pubmed]
  
  
• Ribosome display: selecting and evolving proteins in vitro that specifically bind to a target.
  Zahnd C, et al. Nat Methods. 4:269-79 (2007) [pubmed]
  
  
• High-throughput proteomics using antibody microarrays: an update.
  Borrebaeck CA, Wingren C. Expert Rev. Molecular Diagnostics 7:673-86 (2007) [pubmed]
  
  
• Antibody microarray-based profiling of complex specimens: systematic evaluation of labeling strategies
  Kusnezow W, et al Proteomics 7:1786-99 [pubmed]
  
  

2008

• Protein production and purification.
  Gräslund S et al Nature Methods 5:135-46 (2008) [pubmed]
  
  
• Human protein atlas and the use of microarray technologies
  Hober S, Uhlén M Curr. Opinion Biotechnology 19:30-5 [pubmed]
  
  
• Proteomics and diagnostics: Let's Get Specific, again.
  Zichi D, et al Curr. Opinion Chem. Biol. 12:78-85 (2008) [pubmed]
  
  
• Alternative binding proteins get mature: rivalling antibodies.
  Kolmar H, Skerra A. FEBS J. 275:2667 (2008) [pubmed]
  
  
• Single-domain antibodies as building blocks for novel therapeutics
  Saerens D, et al Curr Opin Pharmacol. 8:600-608 (2008) [pubmed]
  
  
• Antibody technology in proteomics.
  Saerens D, et al Brief Funct Genomic Proteomic. 7:275-82 (2008) [pubmed]
  
  
• The epitope space of the human proteome.
  Berglund L, et al. Protein Sci. 17:606-13 (2008) [pubmed]
  
  
• Affinity as a tool in life science.
  Uhlén M. Biotechniques. 44:649-54 [pubmed]
  
  
• On display on a bug: a systematic approach to characterize antibodies
  Knorpp T, Templin MF. Nat Methods. 5:1003-4. [pubmed]
  
  
• A genecentric Human Protein Atlas for expression profiles based on antibodies.
  Berglund L, et al Mol Cell Proteomics. 7:2019-27 (2008) [pubmed]
  
  
• Antibodypedia, a portal for sharing antibody and antigen validation data.
  Björling E, Uhlén M. Mol Cell Proteomics 7:2028-37 (2008) [pubmed] [pdf]
  
  
• A pilot project to generate affinity reagents to human proteins
  Uhlén M, et al Nature Methods 5:854-5 (2008) [pubmed] [pdf]
  
  
• A new era for proteomics research?
  Uhlén M Genome Biol. 9:325 (2008) [pubmed]
  
  

2009

• Protein microarrays for diagnostic assays.
  Hartmann M, et al Anal Bioanal Chem. 393:1407-16 (2009) [pubmed]
  
  
• Design of high-density antibody microarrays for disease proteomics: Key technological issues.
  Borrebaeck CA, Wingren C J Proteomics [pubmed]
  
  
• Generation and validation of affinity reagents on a proteome-wide level.
  Uhlén M, Hober S J Mol Recognit. 22:57-64 [pubmed]
  
  
• Protein microarrays: high-throughput tools for proteomics.
  Stoevesandt O, et al. Expert Rev Proteomics. 6:145-57 (2009) [pubmed]
  
  
• Strategy for surveying the proteome using affinity proteomics and mass spectrometry.
  Wingren C, et al. Proteomics. 9:1511-7 (2009) [pubmed]
  
  
• Approaching clinical proteomics: current state and future fields of application in cellular proteomics.
  Apweiler R et al Cytometry A. 75:816-32 (2009) [pubmed]
  
  
• Camelid immunoglobulins and nanobody technology.
  Muyldermans S, et al. Vet Immunol Immunopathol. 128:178-83 (2009) [pubmed]
  
  
• Oncoproteomic profiling with antibody microarrays.
  Alhamdani MS et al. Genome Med. 1:68 (2009) [pubmed]
  
  

2010

• Automation in the high-throughput selection of random combinatorial libraries--different approaches for select applications.
  Glökler J, et al Molecules 15:2478-90 (2010) [pubmed]
  
  
• Dual-color proteomic profiling of complex samples with a microarray of 810 cancer-related antibodies.
  Schröder C, et al. Mol Cell Proteomics. 9:1271-80 (2010) [pubmed]
  
  
• Sensitive plasma protein analysis by microparticle-based proximity ligation assays.
  Darmanis S et al., Mol Cell Proteomics.9:327-35 (2010) [pubmed]
  
  
• Modulation of protein properties in living cells using nanobodies
  Kirchhofer A et al Nat Struct Mol Biol. 17:133-8 (2010) [pubmed]
  
  
• A community standard format for the representation of protein affinity reagents.
  Gloriam DE et al Mol Cell Proteomics. 9:1-10 (2010) [pubmed] [article]
  
  
• Minimum information about a protein affinity reagent (MIAPAR).
  Bourbeillon J, et al. Nat Biotechnol.28:650-3 (2010) [pubmed]
  
  
• Generating recombinant antibodies to the complete human proteome.
  Dübel S, et al Trends in Biotechnol. 28:333-9 (2010) [pubmed]


• EpiC: An Open Resource for Exploring Epitopes to Aid Antibody-based Experiments.
  Haslam, NJ and Gibson, TJ J. Proteome Research, 9:3759-63. (2010) [pubmed]

Editorials and Articles

• Antibodypedia seeks to answer the question: "how good is that antibody?"
  Cottingham K. Journal of Proteome Research. 7:4213 (2008). [pubmed] [pdf]
  
  
• Proteomics' framework for success? Editorial Nature Methods. 4:1-4 (2007) [pubmed] [pdf]
  
  
• ProteomeBinders consortium makes big plans
  Cottingham K. Journal of Proteome Research. 5:12 (2006) [pdf]
  
  
• ‘Chain gang’ delivers for hard labor - a look at current strategies for building a better antibody
  Eisenstein M. Nature Methods. 3:753-762 (2006) [pdf]
  
  
• The Way of the Array
  Griffiths J. Analytical Chemistry, 23: 8833-8837 (2007)
  
  
• EU Binder Project (News in Brief)
  Nature Biotechnology, 25:494 (2007)
  
  
• Therapeutic Antibodies: Coming Through the Pipeline.
  Piggee C. Analytical Chemistry, 80:2305-2310 (2008)
  
  
• ProteomeBinders Brochure
  A quick overview of ProtemeBinders aims and achievements